Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10244
Genomic locus:	chr2:29962106-30007084
Size/Length:	44978 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001290503
Gene Symbol:	Zer1
Chromosome:	chr9
TSS:	131492066 (Transcription start site)
TES:	131534213 (Transcription end site)
Strand:	-
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10244

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035497	mSE_10244	chr2	29962106	29962710	604	93.69
CM035498	mSE_10244	chr2	29974446	29975989	1543	236.2
CM035499	mSE_10244	chr2	29978999	29981402	2403	481.27
CM035500	mSE_10244	chr2	29984990	29986554	1564	1289.81
CM035501	mSE_10244	chr2	29986921	29987831	910	569.59
CM035502	mSE_10244	chr2	29987992	29993358	5366	3100
CM035503	mSE_10244	chr2	30005403	30007084	1681	126.01