Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10245
Genomic locus:	chr11:76162948-76207181
Size/Length:	44233 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008750
Gene Symbol:	Nxn
Chromosome:	chr11
TSS:	76070727 (Transcription start site)
TES:	76212643 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:76162948-76207181
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10245

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033966	mSE_10245	chr11	76162948	76164980	2032	796.25
CM033967	mSE_10245	chr11	76165163	76167593	2430	1305.51
CM033968	mSE_10245	chr11	76167631	76168215	584	117.51
CM033969	mSE_10245	chr11	76169981	76172196	2215	1105
CM033970	mSE_10245	chr11	76173314	76174803	1489	138.43
CM033971	mSE_10245	chr11	76176555	76178927	2372	829.54
CM033972	mSE_10245	chr11	76184255	76184868	613	95.46
CM033973	mSE_10245	chr11	76187215	76189925	2710	394.17
CM033974	mSE_10245	chr11	76198634	76199609	975	139.88
CM033975	mSE_10245	chr11	76201491	76202023	532	91.1
CM033976	mSE_10245	chr11	76206188	76207181	993	156.32