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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10246
Genomic locus: chr17:56996916-57026552
Size/Length: 29636 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001039114
Gene Symbol: Acsbg2
Chromosome: chr17
TSS: 56982526 (Transcription start site)
TES: 57013870 (Transcription end site)
Strand: -
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr17:56996916-57026552
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10246

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035150 mSE_10246 chr17 56996916 56998699 1783 358.41
CM035151 mSE_10246 chr17 57000951 57002125 1174 209.63
CM035152 mSE_10246 chr17 57004820 57006153 1333 420.02
CM035153 mSE_10246 chr17 57007229 57012791 5562 3100
CM035154 mSE_10246 chr17 57014641 57016401 1760 311.93
CM035155 mSE_10246 chr17 57016423 57017446 1023 312.87
CM035156 mSE_10246 chr17 57022561 57026552 3991 1736.36