Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: mSE_10255
Genomic locus: chr11:116283568-116302436
Size/Length: 18868 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol: Fam100b
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr11:116283568-116302436
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10255

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034239 mSE_10255 chr11 116283568 116284225 657 118.38
CM034240 mSE_10255 chr11 116286033 116287451 1418 200.68
CM034241 mSE_10255 chr11 116288046 116289263 1217 364.56
CM034242 mSE_10255 chr11 116289541 116291530 1989 1084.03
CM034243 mSE_10255 chr11 116291533 116294524 2991 1471.37
CM034244 mSE_10255 chr11 116295517 116299420 3903 2804.14
CM034245 mSE_10255 chr11 116300340 116302436 2096 101.35