Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10257
Genomic locus:	chr5:137409483-137442642
Size/Length:	33159 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_025562
Gene Symbol:	Fis1
Chromosome:	chr5
TSS:	137437946 (Transcription start site)
TES:	137442104 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:137409483-137442642
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10257

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036548	mSE_10257	chr5	137409483	137414045	4562	1292.63
CM036549	mSE_10257	chr5	137416847	137419151	2304	910.5
CM036550	mSE_10257	chr5	137426269	137429555	3286	2393.14
CM036551	mSE_10257	chr5	137434867	137435749	882	95.9
CM036552	mSE_10257	chr5	137436458	137439531	3073	524.87
CM036553	mSE_10257	chr5	137441660	137442642	982	134.14