Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10259
Genomic locus:	chr15:61902665-61938295
Size/Length:	35630 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NR_003368
Gene Symbol:	Pvt1
Chromosome:	chr15
TSS:	61869541 (Transcription start site)
TES:	62082530 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:61902665-61938295
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10259

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034710	mSE_10259	chr15	61902665	61903610	945	140.04
CM034711	mSE_10259	chr15	61909271	61909722	451	90.68
CM034712	mSE_10259	chr15	61910117	61911537	1420	1057.94
CM034713	mSE_10259	chr15	61916422	61917164	742	129.03
CM034714	mSE_10259	chr15	61917355	61920172	2817	602.71
CM034715	mSE_10259	chr15	61921164	61925655	4491	2138.35
CM034716	mSE_10259	chr15	61925773	61926208	435	104.41
CM034717	mSE_10259	chr15	61929871	61930991	1120	166.39
CM034718	mSE_10259	chr15	61937228	61938295	1067	197.23