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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10261
Genomic locus: chr8:12476968-12506078
Size/Length: 29110 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol: 1700094C09Rik
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr8:12476968-12506078
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10261

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037086 mSE_10261 chr8 12476968 12478903 1935 1873.48
CM037087 mSE_10261 chr8 12478993 12480889 1896 619.9
CM037088 mSE_10261 chr8 12481512 12482660 1148 90.64
CM037089 mSE_10261 chr8 12485663 12488520 2857 478.89
CM037090 mSE_10261 chr8 12499089 12500473 1384 189.13
CM037091 mSE_10261 chr8 12501718 12503819 2101 1098.69
CM037092 mSE_10261 chr8 12503855 12506078 2223 1408.97