Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10263
Genomic locus:	chr7:28110397-28146461
Size/Length:	36064 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001113549
Gene Symbol:	Ltbp4
Chromosome:	chr7
TSS:	28090159 (Transcription start site)
TES:	28118667 (Transcription end site)
Strand:	-
Number of Exons:	30
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:28110397-28146461
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10263

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036830	mSE_10263	chr7	28110397	28112147	1750	167.63
CM036831	mSE_10263	chr7	28112435	28113906	1471	132.02
CM036832	mSE_10263	chr7	28114533	28115906	1373	476.42
CM036833	mSE_10263	chr7	28115990	28118684	2694	2751.53
CM036834	mSE_10263	chr7	28130687	28131440	753	158.91
CM036835	mSE_10263	chr7	28139698	28140969	1271	217.48
CM036836	mSE_10263	chr7	28141048	28143935	2887	946
CM036837	mSE_10263	chr7	28144276	28146461	2185	1392.64