Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10267
Genomic locus:	chr11:107292354-107325215
Size/Length:	32861 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_145823
Gene Symbol:	Pitpnc1
Chromosome:	chr11
TSS:	107069205 (Transcription start site)
TES:	107332034 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:107292354-107325215
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10267

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034197	mSE_10267	chr11	107292354	107295630	3276	628.25
CM034198	mSE_10267	chr11	107295790	107299154	3364	1715.52
CM034199	mSE_10267	chr11	107300018	107300848	830	189.04
CM034200	mSE_10267	chr11	107301069	107301607	538	92.22
CM034201	mSE_10267	chr11	107307951	107312094	4143	2156.9
CM034202	mSE_10267	chr11	107312323	107313275	952	133.38
CM034203	mSE_10267	chr11	107315684	107317001	1317	486.94
CM034204	mSE_10267	chr11	107319135	107320244	1109	139.63
CM034205	mSE_10267	chr11	107324547	107325215	668	143.96