Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10274
Genomic locus:	chr14:119090136-119114759
Size/Length:	24623 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001163676
Gene Symbol:	Abcc4
Chromosome:	chr14
TSS:	118881913 (Transcription start site)
TES:	119105441 (Transcription end site)
Strand:	-
Number of Exons:	30
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:119090136-119114759
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10274

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034661	mSE_10274	chr14	119090136	119091842	1706	245.09
CM034662	mSE_10274	chr14	119094256	119100453	6197	1456.71
CM034663	mSE_10274	chr14	119104794	119106740	1946	104.65
CM034664	mSE_10274	chr14	119107941	119109726	1785	1020.31
CM034665	mSE_10274	chr14	119111882	119114759	2877	1909.55