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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10276
Genomic locus: chr7:147122457-147138149
Size/Length: 15692 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_009482
Gene Symbol: Utf1
Chromosome: chr7
TSS: 147129754 (Transcription start site)
TES: 147131011 (Transcription end site)
Strand: +
Number of Exons: 2
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr7:147122457-147138149
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10276

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037054 mSE_10276 chr7 147122457 147124679 2222 675.07
CM037055 mSE_10276 chr7 147125393 147127477 2084 315.08
CM037056 mSE_10276 chr7 147129711 147131585 1874 1193.35
CM037057 mSE_10276 chr7 147131635 147133565 1930 1941.45
CM037058 mSE_10276 chr7 147134898 147138149 3251 1266.08