Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10278
Genomic locus:	chr11:102170424-102201199
Size/Length:	30775 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011551
Gene Symbol:	Ubtf
Chromosome:	chr11
TSS:	102165876 (Transcription start site)
TES:	102180410 (Transcription end site)
Strand:	-
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:102170424-102201199
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10278

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034164	mSE_10278	chr11	102170424	102172380	1956	150.98
CM034165	mSE_10278	chr11	102176619	102178151	1532	341.61
CM034166	mSE_10278	chr11	102178161	102179160	999	409.65
CM034167	mSE_10278	chr11	102179465	102180350	885	813.82
CM034168	mSE_10278	chr11	102180522	102182495	1973	684.45
CM034169	mSE_10278	chr11	102188410	102190583	2173	1038.58
CM034170	mSE_10278	chr11	102190676	102193380	2704	2032.86
CM034171	mSE_10278	chr11	102193772	102197084	3312	1110.26
CM034172	mSE_10278	chr11	102197500	102197915	415	91.57
CM034173	mSE_10278	chr11	102199877	102201199	1322	136.25