Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10279
Genomic locus:	chr7:30765353-30778921
Size/Length:	13568 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001033355
Gene Symbol:	Zfp568
Chromosome:	chr7
TSS:	30768973 (Transcription start site)
TES:	30813301 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:30765353-30778921
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10279

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036868	mSE_10279	chr7	30765353	30769523	4170	3100
CM036869	mSE_10279	chr7	30769650	30770091	441	106.06
CM036870	mSE_10279	chr7	30770610	30771635	1025	229.56
CM036871	mSE_10279	chr7	30778149	30778921	772	150.83