Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10280
Genomic locus:	chr11:97254238-97303892
Size/Length:	49654 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_021493
Gene Symbol:	Arhgap23
Chromosome:	chr11
TSS:	97311473 (Transcription start site)
TES:	97363714 (Transcription end site)
Strand:	+
Number of Exons:	19
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:97254238-97303892
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10280

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034105	mSE_10280	chr11	97254238	97255659	1421	203.65
CM034106	mSE_10280	chr11	97261339	97262268	929	166.82
CM034107	mSE_10280	chr11	97268489	97269820	1331	435.77
CM034108	mSE_10280	chr11	97272083	97274883	2800	2304.42
CM034109	mSE_10280	chr11	97275035	97275715	680	113.83
CM034110	mSE_10280	chr11	97276318	97276789	471	93.85
CM034111	mSE_10280	chr11	97288183	97290972	2789	939.66
CM034112	mSE_10280	chr11	97295887	97298475	2588	921.76
CM034113	mSE_10280	chr11	97298823	97300372	1549	201.51
CM034114	mSE_10280	chr11	97302596	97303892	1296	138.24