Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10281
Genomic locus:	chr4:133148117-133163916
Size/Length:	15799 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_018754
Gene Symbol:	Sfn
Chromosome:	chr4
TSS:	133156470 (Transcription start site)
TES:	133158083 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:133148117-133163916
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10281

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036197	mSE_10281	chr4	133148117	133148644	527	167.07
CM036198	mSE_10281	chr4	133150707	133152258	1551	455.36
CM036199	mSE_10281	chr4	133152666	133153572	906	107.8
CM036200	mSE_10281	chr4	133153646	133156603	2957	3100
CM036201	mSE_10281	chr4	133157770	133163916	6146	1091.11