Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10282
Genomic locus:	chr10:21700337-21717398
Size/Length:	17061 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001161847
Gene Symbol:	Sgk1
Chromosome:	chr10
TSS:	21698477 (Transcription start site)
TES:	21719708 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr10:21700337-21717398
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10282

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033594	mSE_10282	chr10	21700337	21703130	2793	3100
CM033595	mSE_10282	chr10	21706295	21706614	319	101.42
CM033596	mSE_10282	chr10	21706750	21707262	512	96.65
CM033597	mSE_10282	chr10	21707294	21709675	2381	2154.18
CM033598	mSE_10282	chr10	21710688	21713596	2908	1504.36
CM033599	mSE_10282	chr10	21713637	21714352	715	176.27
CM033600	mSE_10282	chr10	21714460	21715127	667	106.54
CM033601	mSE_10282	chr10	21716042	21716777	735	91.36
CM033602	mSE_10282	chr10	21716845	21717398	553	93.66