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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10285
Genomic locus: chr18:75519087-75557920
Size/Length: 38833 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001042660
Gene Symbol: Smad7
Chromosome: chr18
TSS: 75527018 (Transcription start site)
TES: 75555588 (Transcription end site)
Strand: +
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr18:75519087-75557920
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10285

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035295 mSE_10285 chr18 75519087 75521485 2398 887.6
CM035296 mSE_10285 chr18 75525828 75526898 1070 1910.03
CM035297 mSE_10285 chr18 75527011 75530194 3183 756.51
CM035298 mSE_10285 chr18 75536076 75540722 4646 615.12
CM035299 mSE_10285 chr18 75550464 75552119 1655 141.8
CM035300 mSE_10285 chr18 75552430 75553341 911 97.45
CM035301 mSE_10285 chr18 75556155 75556729 574 93.32
CM035302 mSE_10285 chr18 75556753 75557920 1167 116.09