Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10287
Genomic locus:	chr7:148143803-148162653
Size/Length:	18850 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_026820
Gene Symbol:	Ifitm1
Chromosome:	chr7
TSS:	148153327 (Transcription start site)
TES:	148155726 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:148143803-148162653
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10287

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037059	mSE_10287	chr7	148143803	148147090	3287	2957.24
CM037060	mSE_10287	chr7	148148188	148148898	710	645.76
CM037061	mSE_10287	chr7	148148919	148150359	1440	587.16
CM037062	mSE_10287	chr7	148150372	148151073	701	165.7
CM037063	mSE_10287	chr7	148152760	148154132	1372	719.4
CM037064	mSE_10287	chr7	148154138	148154561	423	392.34
CM037065	mSE_10287	chr7	148154941	148155440	499	106.34
CM037066	mSE_10287	chr7	148155592	148156693	1101	92.92
CM037067	mSE_10287	chr7	148156771	148158338	1567	456.37
CM037068	mSE_10287	chr7	148158799	148160062	1263	578.59
CM037069	mSE_10287	chr7	148160332	148161608	1276	624.91
CM037070	mSE_10287	chr7	148161928	148162653	725	249.07