Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10293
Genomic locus:	chr10:66457162-66492408
Size/Length:	35246 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001204915
Gene Symbol:	Reep3
Chromosome:	chr10
TSS:	66471936 (Transcription start site)
TES:	66559736 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr10:66457162-66492408
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10293

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033641	mSE_10293	chr10	66457162	66458583	1421	217.32
CM033642	mSE_10293	chr10	66464155	66468206	4051	3155.2
CM033643	mSE_10293	chr10	66473073	66473797	724	138.88
CM033644	mSE_10293	chr10	66479236	66479944	708	210.67
CM033645	mSE_10293	chr10	66488174	66489770	1596	1006.98
CM033646	mSE_10293	chr10	66491858	66492408	550	97.63