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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10294
Genomic locus: chr2:154712520-154734585
Size/Length: 22065 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_026030
Gene Symbol: Eif2s2
Chromosome: chr2
TSS: 154697145 (Transcription start site)
TES: 154718642 (Transcription end site)
Strand: -
Number of Exons: 9
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr2:154712520-154734585
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10294

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035643 mSE_10294 chr2 154712520 154713073 553 143.05
CM035644 mSE_10294 chr2 154713542 154714221 679 147.38
CM035645 mSE_10294 chr2 154715906 154716847 941 313.18
CM035646 mSE_10294 chr2 154717230 154719618 2388 352.42
CM035647 mSE_10294 chr2 154719850 154720259 409 320.81
CM035648 mSE_10294 chr2 154720815 154722227 1412 673.39
CM035649 mSE_10294 chr2 154722246 154722853 607 212.57
CM035650 mSE_10294 chr2 154722926 154723593 667 294.91
CM035651 mSE_10294 chr2 154723798 154724268 470 307.92
CM035652 mSE_10294 chr2 154724479 154724892 413 135.55
CM035653 mSE_10294 chr2 154725453 154726091 638 349.86
CM035654 mSE_10294 chr2 154726936 154727429 493 160.67
CM035655 mSE_10294 chr2 154727437 154727886 449 147.93
CM035656 mSE_10294 chr2 154728196 154729561 1365 1507.76
CM035657 mSE_10294 chr2 154730151 154731556 1405 1338.96
CM035658 mSE_10294 chr2 154731704 154733313 1609 1788.92
CM035659 mSE_10294 chr2 154734223 154734585 362 140.83