Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10297
Genomic locus:	chr12:73816801-73871067
Size/Length:	54266 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008910
Gene Symbol:	Ppm1a
Chromosome:	chr12
TSS:	73862197 (Transcription start site)
TES:	73895927 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr12:73816801-73871067
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10297

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034292	mSE_10297	chr12	73816801	73817819	1018	479.7
CM034293	mSE_10297	chr12	73827047	73827846	799	288.82
CM034294	mSE_10297	chr12	73828455	73829103	648	158.88
CM034295	mSE_10297	chr12	73832225	73833229	1004	646.95
CM034296	mSE_10297	chr12	73833561	73835311	1750	1526.9
CM034297	mSE_10297	chr12	73835319	73836205	886	309.65
CM034298	mSE_10297	chr12	73836447	73837007	560	231.15
CM034299	mSE_10297	chr12	73837511	73838164	653	282.01
CM034300	mSE_10297	chr12	73838668	73839630	962	264.86
CM034301	mSE_10297	chr12	73844743	73847216	2473	971.86
CM034302	mSE_10297	chr12	73857596	73858499	903	129.42
CM034303	mSE_10297	chr12	73860833	73862104	1271	306.77
CM034304	mSE_10297	chr12	73870279	73871067	788	111.69