Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10303
Genomic locus:	chr5:115924405-115951127
Size/Length:	26722 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_133760
Gene Symbol:	Sirt4
Chromosome:	chr5
TSS:	115928018 (Transcription start site)
TES:	115934493 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:115924405-115951127
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10303

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036435	mSE_10303	chr5	115924405	115926803	2398	843.32
CM036436	mSE_10303	chr5	115929115	115930869	1754	823.5
CM036437	mSE_10303	chr5	115933840	115935032	1192	297.15
CM036438	mSE_10303	chr5	115939643	115940293	650	1726.46
CM036439	mSE_10303	chr5	115940601	115941280	679	97.11
CM036440	mSE_10303	chr5	115941501	115942739	1238	312.4
CM036441	mSE_10303	chr5	115943327	115944181	854	143.38
CM036442	mSE_10303	chr5	115948038	115949499	1461	261.38
CM036443	mSE_10303	chr5	115950227	115951127	900	220.1