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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10304
Genomic locus: chr19:46106096-46124467
Size/Length: 18371 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001113408
Gene Symbol: Ldb1
Chromosome: chr19
TSS: 46107090 (Transcription start site)
TES: 46119701 (Transcription end site)
Strand: -
Number of Exons: 11
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr19:46106096-46124467
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10304

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035436 mSE_10304 chr19 46106096 46106924 828 124.86
CM035437 mSE_10304 chr19 46110962 46113779 2817 1733.2
CM035438 mSE_10304 chr19 46114030 46115348 1318 583.82
CM035439 mSE_10304 chr19 46115832 46118209 2377 153.24
CM035440 mSE_10304 chr19 46119128 46120464 1336 1293.57
CM035441 mSE_10304 chr19 46120586 46123274 2688 2700.2
CM035442 mSE_10304 chr19 46123388 46124467 1079 381.26