Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10308
Genomic locus:	chr19:42193728-42217633
Size/Length:	23905 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_027106
Gene Symbol:	Avpi1
Chromosome:	chr19
TSS:	42197764 (Transcription start site)
TES:	42203483 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr19:42193728-42217633
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10308

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035421	mSE_10308	chr19	42193728	42194808	1080	203.28
CM035422	mSE_10308	chr19	42197252	42200132	2880	409.25
CM035423	mSE_10308	chr19	42202633	42203503	870	252.93
CM035424	mSE_10308	chr19	42203595	42206686	3091	2546.76
CM035425	mSE_10308	chr19	42207043	42208236	1193	187.51
CM035426	mSE_10308	chr19	42208518	42209524	1006	143.54
CM035427	mSE_10308	chr19	42209689	42212107	2418	1870.4
CM035428	mSE_10308	chr19	42214026	42214746	720	92.99
CM035429	mSE_10308	chr19	42216765	42217633	868	261.26