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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10310
Genomic locus: chr16:38537144-38563521
Size/Length: 26377 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001300827
Gene Symbol: Poglut1
Chromosome: chr16
TSS: 38525141 (Transcription start site)
TES: 38550338 (Transcription end site)
Strand: -
Number of Exons: 11
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr16:38537144-38563521
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10310

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034934 mSE_10310 chr16 38537144 38537965 821 200.52
CM034935 mSE_10310 chr16 38538396 38538912 516 98.08
CM034936 mSE_10310 chr16 38538948 38540916 1968 340.51
CM034937 mSE_10310 chr16 38548259 38550792 2533 940.15
CM034938 mSE_10310 chr16 38553182 38553893 711 124.47
CM034939 mSE_10310 chr16 38555332 38556709 1377 449.68
CM034940 mSE_10310 chr16 38556851 38563521 6670 3100