Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10312
Genomic locus:	chr9:72486769-72524929
Size/Length:	38160 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010890
Gene Symbol:	Nedd4
Chromosome:	chr9
TSS:	72510153 (Transcription start site)
TES:	72597655 (Transcription end site)
Strand:	+
Number of Exons:	29
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:72486769-72524929
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10312

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037521	mSE_10312	chr9	72486769	72489682	2913	3055.52
CM037522	mSE_10312	chr9	72490237	72490730	493	100.68
CM037523	mSE_10312	chr9	72490973	72492436	1463	284.55
CM037524	mSE_10312	chr9	72504009	72505444	1435	394.69
CM037525	mSE_10312	chr9	72509308	72512248	2940	1139.53
CM037526	mSE_10312	chr9	72524011	72524929	918	180.29