Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10314
Genomic locus:	chr5:134787302-134819104
Size/Length:	31802 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001080748
Gene Symbol:	Gtf2i
Chromosome:	chr5
TSS:	134713701 (Transcription start site)
TES:	134790630 (Transcription end site)
Strand:	-
Number of Exons:	33
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:134787302-134819104
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10314

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036495	mSE_10314	chr5	134787302	134788438	1136	238.73
CM036496	mSE_10314	chr5	134788453	134790437	1984	609.26
CM036497	mSE_10314	chr5	134790689	134792466	1777	886.16
CM036498	mSE_10314	chr5	134799708	134800881	1173	296.17
CM036499	mSE_10314	chr5	134804418	134805220	802	192.57
CM036500	mSE_10314	chr5	134805363	134806645	1282	255.95
CM036501	mSE_10314	chr5	134808528	134809614	1086	145.04
CM036502	mSE_10314	chr5	134812454	134813034	580	144.41
CM036503	mSE_10314	chr5	134815034	134816792	1758	1085.4
CM036504	mSE_10314	chr5	134816839	134819104	2265	797.25