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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10315
Genomic locus: chr4:54992634-55019506
Size/Length: 26872 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_172867
Gene Symbol: Zfp462
Chromosome: chr4
TSS: 54960816 (Transcription start site)
TES: 55096435 (Transcription end site)
Strand: +
Number of Exons: 13
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:54992634-55019506
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10315

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036042 mSE_10315 chr4 54992634 54994389 1755 163.37
CM036043 mSE_10315 chr4 54998274 55001322 3048 2117.28
CM036044 mSE_10315 chr4 55002519 55002925 406 126.18
CM036045 mSE_10315 chr4 55003080 55006223 3143 1580.62
CM036046 mSE_10315 chr4 55006297 55007045 748 255.93
CM036047 mSE_10315 chr4 55016071 55016664 593 90.39
CM036048 mSE_10315 chr4 55016692 55019506 2814 2401.83