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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10316
Genomic locus: chr12:12909509-12951098
Size/Length: 41589 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008709
Gene Symbol: Mycn
Chromosome: chr12
TSS: 12942898 (Transcription start site)
TES: 12948642 (Transcription end site)
Strand: -
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr12:12909509-12951098
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10316

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034282 mSE_10316 chr12 12909509 12909977 468 112.24
CM034283 mSE_10316 chr12 12915930 12916699 769 234.76
CM034284 mSE_10316 chr12 12916762 12917567 805 183.96
CM034285 mSE_10316 chr12 12927184 12928266 1082 492.65
CM034286 mSE_10316 chr12 12933698 12935214 1516 1293
CM034287 mSE_10316 chr12 12943292 12948690 5398 1240.09
CM034288 mSE_10316 chr12 12948760 12951098 2338 1274.31