Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10318
Genomic locus:	chr10:75487666-75514710
Size/Length:	27044 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_177475
Gene Symbol:	Zfp280b
Chromosome:	chr10
TSS:	75495356 (Transcription start site)
TES:	75505714 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr10:75487666-75514710
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10318

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033684	mSE_10318	chr10	75487666	75488447	781	310.75
CM033685	mSE_10318	chr10	75489257	75490931	1674	1484.49
CM033686	mSE_10318	chr10	75490940	75492705	1765	1140.66
CM033687	mSE_10318	chr10	75492751	75494113	1362	722.83
CM033688	mSE_10318	chr10	75494392	75495029	637	266.36
CM033689	mSE_10318	chr10	75495263	75496452	1189	90.05
CM033690	mSE_10318	chr10	75506194	75507551	1357	158.97
CM033691	mSE_10318	chr10	75507659	75509017	1358	1721.66
CM033692	mSE_10318	chr10	75509359	75510306	947	206.4
CM033693	mSE_10318	chr10	75510319	75511243	924	193.87
CM033694	mSE_10318	chr10	75513715	75514710	995	560.03