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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10320
Genomic locus: chr11:3232376-3275152
Size/Length: 42776 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001034030
Gene Symbol: Limk2
Chromosome: chr11
TSS: 3243299 (Transcription start site)
TES: 3256144 (Transcription end site)
Strand: -
Number of Exons: 12
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr11:3232376-3275152
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10320

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033783 mSE_10320 chr11 3232376 3233386 1010 93.57
CM033784 mSE_10320 chr11 3234478 3236496 2018 191.97
CM033785 mSE_10320 chr11 3237207 3238473 1266 223.77
CM033786 mSE_10320 chr11 3247095 3249940 2845 2987.73
CM033787 mSE_10320 chr11 3252566 3254102 1536 116.84
CM033788 mSE_10320 chr11 3265754 3267177 1423 157.89
CM033789 mSE_10320 chr11 3268525 3271498 2973 1192.95
CM033790 mSE_10320 chr11 3273812 3275152 1340 167.53