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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10321
Genomic locus: chr8:89405303-89427657
Size/Length: 22354 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_030563
Gene Symbol: N4bp1
Chromosome: chr8
TSS: 89365037 (Transcription start site)
TES: 89409157 (Transcription end site)
Strand: -
Number of Exons: 7
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr8:89405303-89427657
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10321

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037260 mSE_10321 chr8 89405303 89406496 1193 110.4
CM037261 mSE_10321 chr8 89406563 89410123 3560 988.04
CM037262 mSE_10321 chr8 89411047 89413650 2603 2824.79
CM037263 mSE_10321 chr8 89415987 89416793 806 144.04
CM037264 mSE_10321 chr8 89418252 89419580 1328 302.89
CM037265 mSE_10321 chr8 89425444 89426492 1048 226.29
CM037266 mSE_10321 chr8 89426529 89427657 1128 168.56