Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10322
Genomic locus:	chr10:107720831-107737450
Size/Length:	16619 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_054056
Gene Symbol:	Pawr
Chromosome:	chr10
TSS:	107769244 (Transcription start site)
TES:	107851447 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr10:107720831-107737450
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10322

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033751	mSE_10322	chr10	107720831	107722049	1218	422.59
CM033752	mSE_10322	chr10	107722062	107725057	2995	3100
CM033753	mSE_10322	chr10	107725135	107725467	332	243.29
CM033754	mSE_10322	chr10	107725742	107726532	790	214.55
CM033755	mSE_10322	chr10	107727165	107727961	796	343.37
CM033756	mSE_10322	chr10	107728297	107729159	862	587.33
CM033757	mSE_10322	chr10	107729215	107729635	420	128.1
CM033758	mSE_10322	chr10	107729685	107730526	841	174.66
CM033759	mSE_10322	chr10	107730743	107731258	515	246.56
CM033760	mSE_10322	chr10	107731365	107733872	2507	974.55
CM033761	mSE_10322	chr10	107735111	107737450	2339	565.81