Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10323
Genomic locus:	chr7:130352928-130364709
Size/Length:	11781 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_146198
Gene Symbol:	Slc5a11
Chromosome:	chr7
TSS:	130358379 (Transcription start site)
TES:	130416765 (Transcription end site)
Strand:	+
Number of Exons:	17
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:130352928-130364709
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10323

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037012	mSE_10323	chr7	130352928	130355196	2268	802.11
CM037013	mSE_10323	chr7	130355255	130355786	531	150.49
CM037014	mSE_10323	chr7	130357325	130359992	2667	2364.49
CM037015	mSE_10323	chr7	130360925	130364709	3784	2202.52