Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10325
Genomic locus:	chr8:48393725-48426019
Size/Length:	32294 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_175162
Gene Symbol:	Stox2
Chromosome:	chr4
TSS:	184826508 (Transcription start site)
TES:	184938875 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10325

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037187	mSE_10325	chr8	48393725	48394363	638	184.95
CM037188	mSE_10325	chr8	48405118	48406071	953	115.17
CM037189	mSE_10325	chr8	48406253	48407220	967	166.87
CM037190	mSE_10325	chr8	48408330	48411207	2877	2057.4
CM037191	mSE_10325	chr8	48419554	48420607	1053	277.28
CM037192	mSE_10325	chr8	48420813	48422588	1775	1086.17
CM037193	mSE_10325	chr8	48422795	48423691	896	167.96
CM037194	mSE_10325	chr8	48423885	48426019	2134	1478.1