Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10327
Genomic locus:	chr11:87931534-87955043
Size/Length:	23509 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_198013
Gene Symbol:	Cuedc1
Chromosome:	chr11
TSS:	87912647 (Transcription start site)
TES:	88007642 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:87931534-87955043
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10327

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034016	mSE_10327	chr11	87931534	87933424	1890	306.23
CM034017	mSE_10327	chr11	87934848	87938247	3399	2441.65
CM034018	mSE_10327	chr11	87944776	87946081	1305	285.27
CM034019	mSE_10327	chr11	87950685	87955043	4358	2929.43