Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10331
Genomic locus:	chr19:14729380-14754307
Size/Length:	24927 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001302950
Gene Symbol:	Tle4
Chromosome:	chr19
TSS:	14522561 (Transcription start site)
TES:	14672673 (Transcription end site)
Strand:	-
Number of Exons:	19
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr19:14729380-14754307
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10331

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035376	mSE_10331	chr19	14729380	14731040	1660	602.58
CM035377	mSE_10331	chr19	14736488	14739558	3070	3042.36
CM035378	mSE_10331	chr19	14739614	14740431	817	222.4
CM035379	mSE_10331	chr19	14740443	14741803	1360	775.57
CM035380	mSE_10331	chr19	14742037	14742593	556	271.9
CM035381	mSE_10331	chr19	14742693	14743135	442	111.9
CM035382	mSE_10331	chr19	14744496	14746431	1935	2346.4
CM035383	mSE_10331	chr19	14746498	14747406	908	116.81
CM035384	mSE_10331	chr19	14750506	14751242	736	379.25
CM035385	mSE_10331	chr19	14751387	14752177	790	326.02
CM035386	mSE_10331	chr19	14752750	14753479	729	150.83
CM035387	mSE_10331	chr19	14753844	14754307	463	180.54