Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: mSE_10332
Genomic locus: chr11:68825353-68854455
Size/Length: 29102 bp
Genome: Mouse -
Cell/Tissue: Embryonic stem cells
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol: 1500010J02Rik
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10332

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033950 mSE_10332 chr11 68825353 68825988 635 317.88
CM033951 mSE_10332 chr11 68828009 68831197 3188 1837.31
CM033952 mSE_10332 chr11 68838069 68838608 539 113.04
CM033953 mSE_10332 chr11 68839256 68842328 3072 1867.26
CM033954 mSE_10332 chr11 68847574 68848593 1019 130.35
CM033955 mSE_10332 chr11 68848641 68849613 972 209.12
CM033956 mSE_10332 chr11 68852621 68853858 1237 319.3
CM033957 mSE_10332 chr11 68853897 68854455 558 186.44