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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10336
Genomic locus: chr10:76592719-76627172
Size/Length: 34453 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_009929
Gene Symbol: Col18a1
Chromosome: chr10
TSS: 76514923 (Transcription start site)
TES: 76629275 (Transcription end site)
Strand: -
Number of Exons: 42
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr10:76592719-76627172
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10336

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033695 mSE_10336 chr10 76592719 76596048 3329 1426.88
CM033696 mSE_10336 chr10 76596094 76597826 1732 453.07
CM033697 mSE_10336 chr10 76597868 76598305 437 104.99
CM033698 mSE_10336 chr10 76600790 76602227 1437 216.23
CM033699 mSE_10336 chr10 76607593 76610691 3098 701.77
CM033700 mSE_10336 chr10 76612735 76614970 2235 220.35
CM033701 mSE_10336 chr10 76616334 76618490 2156 452.9
CM033702 mSE_10336 chr10 76626058 76627172 1114 475.09