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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10338
Genomic locus: chr17:88362039-88377742
Size/Length: 15703 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_010830
Gene Symbol: Msh6
Chromosome: chr17
TSS: 88374389 (Transcription start site)
TES: 88390232 (Transcription end site)
Strand: +
Number of Exons: 10
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr17:88362039-88377742
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10338

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035217 mSE_10338 chr17 88362039 88362905 866 207.29
CM035218 mSE_10338 chr17 88363479 88363814 335 107
CM035219 mSE_10338 chr17 88370521 88371370 849 528.37
CM035220 mSE_10338 chr17 88371568 88374350 2782 3100
CM035221 mSE_10338 chr17 88374355 88376114 1759 991.53
CM035222 mSE_10338 chr17 88376806 88377742 936 146.23