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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10339
Genomic locus: chr10:119597733-119610837
Size/Length: 13104 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_028679
Gene Symbol: Irak3
Chromosome: chr10
TSS: 119578709 (Transcription start site)
TES: 119638593 (Transcription end site)
Strand: -
Number of Exons: 12
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr10:119597733-119610837
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10339

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033775 mSE_10339 chr10 119597733 119598449 716 161.76
CM033776 mSE_10339 chr10 119599385 119601748 2363 1555.6
CM033777 mSE_10339 chr10 119601813 119602426 613 203.91
CM033778 mSE_10339 chr10 119602597 119603808 1211 380.61
CM033779 mSE_10339 chr10 119604313 119605491 1178 373.87
CM033780 mSE_10339 chr10 119605688 119610097 4409 3100
CM033781 mSE_10339 chr10 119610252 119610837 585 105.74