Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10341
Genomic locus:	chr17:84126464-84153661
Size/Length:	27197 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001171054
Gene Symbol:	Mta3
Chromosome:	chr17
TSS:	84105502 (Transcription start site)
TES:	84192217 (Transcription end site)
Strand:	+
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:84126464-84153661
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10341

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035206	mSE_10341	chr17	84126464	84127567	1103	393.65
CM035207	mSE_10341	chr17	84127643	84130066	2423	1465.79
CM035208	mSE_10341	chr17	84130670	84132019	1349	171.15
CM035209	mSE_10341	chr17	84141612	84143160	1548	557.99
CM035210	mSE_10341	chr17	84145943	84146471	528	90.68
CM035211	mSE_10341	chr17	84148949	84151084	2135	1597.01
CM035212	mSE_10341	chr17	84151119	84151633	514	180.72
CM035213	mSE_10341	chr17	84151873	84153661	1788	594.33