Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10345
Genomic locus:	chr13:40945929-40967020
Size/Length:	21091 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008105
Gene Symbol:	Gcnt2
Chromosome:	chr13
TSS:	40982126 (Transcription start site)
TES:	41056261 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr13:40945929-40967020
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10345

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034415	mSE_10345	chr13	40945929	40948748	2819	855.27
CM034416	mSE_10345	chr13	40948765	40951391	2626	982.46
CM034417	mSE_10345	chr13	40958879	40960453	1574	207.43
CM034418	mSE_10345	chr13	40963117	40965808	2691	3100
CM034419	mSE_10345	chr13	40965920	40967020	1100	399.56