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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10346
Genomic locus: chr11:93989164-94025684
Size/Length: 36520 bp
Genome: Mouse -
Cell/Tissue: Embryonic stem cells
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_009427
Gene Symbol: Tob1
Chromosome: chr17
TSS: 48939586 (Transcription start site)
TES: 48945339 (Transcription end site)
Strand: -
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10346

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034042 mSE_10346 chr11 93989164 93989703 539 130.69
CM034043 mSE_10346 chr11 93994615 93998031 3416 302.35
CM034044 mSE_10346 chr11 93998091 94001543 3452 1442.28
CM034045 mSE_10346 chr11 94001593 94002127 534 174.66
CM034046 mSE_10346 chr11 94002188 94003575 1387 275.12
CM034047 mSE_10346 chr11 94010398 94013436 3038 315.45
CM034048 mSE_10346 chr11 94019828 94022618 2790 525.15
CM034049 mSE_10346 chr11 94024009 94025684 1675 236.74