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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10348
Genomic locus: chrX:55280518-55297071
Size/Length: 16553 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_009575
Gene Symbol: Zic3
Chromosome: chrX
TSS: 55283804 (Transcription start site)
TES: 55289807 (Transcription end site)
Strand: +
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chrX:55280518-55297071
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10348

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037611 mSE_10348 chrX 55280518 55285737 5219 1505.4
CM037612 mSE_10348 chrX 55285802 55287382 1580 472.48
CM037613 mSE_10348 chrX 55290645 55291915 1270 1386.44
CM037614 mSE_10348 chrX 55292037 55294176 2139 1859.46
CM037615 mSE_10348 chrX 55294568 55294867 299 125.07
CM037616 mSE_10348 chrX 55295469 55297071 1602 902.39