Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10351
Genomic locus:	chr14:12937015-12947581
Size/Length:	10566 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_146051
Gene Symbol:	3830406C13Rik
Chromosome:	chr14
TSS:	13116716 (Transcription start site)
TES:	13135745 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:12937015-12947581
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10351

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034535	mSE_10351	chr14	12937015	12938472	1457	255.73
CM034536	mSE_10351	chr14	12939568	12940134	566	101.91
CM034537	mSE_10351	chr14	12940320	12942734	2414	3100
CM034538	mSE_10351	chr14	12943287	12944619	1332	261.28
CM034539	mSE_10351	chr14	12944697	12947581	2884	3100