Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10354
Genomic locus:	chr1:169198335-169220851
Size/Length:	22516 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_030724
Gene Symbol:	Uck2
Chromosome:	chr1
TSS:	169156216 (Transcription start site)
TES:	169215258 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:169198335-169220851
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10354

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033539	mSE_10354	chr1	169198335	169199776	1441	425.03
CM033540	mSE_10354	chr1	169199859	169202638	2779	1220.99
CM033541	mSE_10354	chr1	169203887	169205766	1879	1042.65
CM033542	mSE_10354	chr1	169208730	169209794	1064	141.31
CM033543	mSE_10354	chr1	169210120	169211228	1108	468.98
CM033544	mSE_10354	chr1	169213479	169214692	1213	244.62
CM033545	mSE_10354	chr1	169214697	169215281	584	124.86
CM033546	mSE_10354	chr1	169219024	169220851	1827	767.56