Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10357
Genomic locus:	chr18:47072677-47098553
Size/Length:	25876 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Gm949
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr18:47072677-47098553
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10357

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035259	mSE_10357	chr18	47072677	47073650	973	299.02
CM035260	mSE_10357	chr18	47073677	47074117	440	291.97
CM035261	mSE_10357	chr18	47074174	47075265	1091	965.39
CM035262	mSE_10357	chr18	47077281	47079146	1865	1425.98
CM035263	mSE_10357	chr18	47079157	47080338	1181	695.1
CM035264	mSE_10357	chr18	47080418	47081120	702	217.17
CM035265	mSE_10357	chr18	47082682	47083305	623	190.17
CM035266	mSE_10357	chr18	47090170	47092334	2164	738.38
CM035267	mSE_10357	chr18	47093885	47094592	707	179.29
CM035268	mSE_10357	chr18	47094768	47095542	774	268.75
CM035269	mSE_10357	chr18	47095863	47097383	1520	577.04
CM035270	mSE_10357	chr18	47097654	47098553	899	527.49