Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10358
Genomic locus:	chr2:128988091-129034354
Size/Length:	46263 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_015747
Gene Symbol:	Slc20a1
Chromosome:	chr2
TSS:	129024508 (Transcription start site)
TES:	129037348 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:128988091-129034354
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10358

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035601	mSE_10358	chr2	128988091	128989040	949	262.22
CM035602	mSE_10358	chr2	128989426	128989959	533	130.73
CM035603	mSE_10358	chr2	128992271	128993507	1236	214.9
CM035604	mSE_10358	chr2	129002216	129003601	1385	556.15
CM035605	mSE_10358	chr2	129003623	129005599	1976	2516.2
CM035606	mSE_10358	chr2	129006154	129006623	469	236.41
CM035607	mSE_10358	chr2	129006705	129007316	611	107.85
CM035608	mSE_10358	chr2	129019219	129020582	1363	288.58
CM035609	mSE_10358	chr2	129023506	129024430	924	119.89
CM035610	mSE_10358	chr2	129024506	129024986	480	112.11
CM035611	mSE_10358	chr2	129031237	129032462	1225	283.53
CM035612	mSE_10358	chr2	129032475	129033211	736	103.75
CM035613	mSE_10358	chr2	129033331	129034354	1023	98.7