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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10360
Genomic locus: chr7:20326069-20368207
Size/Length: 42138 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_020486
Gene Symbol: Bcam
Chromosome: chr7
TSS: 20341486 (Transcription start site)
TES: 20355881 (Transcription end site)
Strand: -
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr7:20326069-20368207
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10360

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036804 mSE_10360 chr7 20326069 20327075 1006 250.07
CM036805 mSE_10360 chr7 20327116 20329222 2106 1148.07
CM036806 mSE_10360 chr7 20332272 20334820 2548 389.74
CM036807 mSE_10360 chr7 20338921 20340294 1373 629.99
CM036808 mSE_10360 chr7 20345154 20346107 953 133.79
CM036809 mSE_10360 chr7 20353478 20357567 4089 395.02
CM036810 mSE_10360 chr7 20367375 20368207 832 125.15